Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_2277Phytoene synthase. (415 aa)    
Predicted Functional Partners:
CSIRO_2279
Phytoene synthase.
  
 0.976
CSIRO_2278
Phytoene synthase.
  
 0.957
CSIRO_2280
Phytoene desaturase.
 
     0.951
CSIRO_2281
Squalene--hopene cyclase.
 
     0.946
CSIRO_2282
Hypothetical protein.
 
     0.913
CSIRO_1207
Hypothetical protein.
  
 
 0.799
CSIRO_3835
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.788
CSIRO_2285
Putative molybdenum cofactor biosynthesis protein.
 
   
 0.787
CSIRO_2288
Putative protein export membrane protein.
 
   
 0.775
CSIRO_3406
TPR repeat-containing protein.
 
 0.774
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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