Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2278Phytoene synthase. (292 aa)    
Predicted Functional Partners:
CSIRO_2279
Phytoene synthase.
  
 0.999
CSIRO_2280
Phytoene desaturase.
 
  
 0.984
CSIRO_2277
Phytoene synthase.
  
 0.957
CSIRO_2281
Squalene--hopene cyclase.
 
 
 0.953
CSIRO_2282
Hypothetical protein.
 
   
 0.888
CSIRO_2275
Hypothetical protein.
 
  
 0.750
CSIRO_0464
Carotenoid cis-trans isomerase.
  
 
 0.692
rpsB
SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.
   
 
  0.692
CSIRO_4053
Beta-carotene ketolase.
  
 
 0.692
CSIRO_0507
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase; Bifunctional; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.691
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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