STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2281Squalene--hopene cyclase. (657 aa)    
Predicted Functional Partners:
CSIRO_2279
Phytoene synthase.
 
 
 0.963
CSIRO_2277
Phytoene synthase.
 
     0.936
CSIRO_2278
Phytoene synthase.
 
 
 0.929
CSIRO_2280
Phytoene desaturase.
 
   
 0.924
CSIRO_2282
Hypothetical protein.
 
   
 0.919
CSIRO_0140
Putative sterol desaturase.
   
 0.907
CSIRO_2285
Putative molybdenum cofactor biosynthesis protein.
 
   
 0.800
CSIRO_2288
Putative protein export membrane protein.
 
     0.783
CSIRO_4112
Hypothetical protein.
  
 
 0.712
CSIRO_2127
Putative 3-(3-hydroxy-phenyl)propionate hydroxylase.
  
 
 0.692
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.