STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2300Putative uracil-DNA glycosylase. (479 aa)    
Predicted Functional Partners:
CSIRO_1760
uracil-DNA glycosylase.
  
  
 
0.709
CSIRO_3324
eracil-DNA glycosylase.
  
  
 0.692
CSIRO_2841
CheY-like response regulator protein.
  
     0.569
CSIRO_2299
FMN-binding flavin reductase-like protein.
       0.556
CSIRO_0993
DNA topoisomerase IB.
  
     0.525
CSIRO_1792
Signal transduction histidine kinase.
  
     0.524
CSIRO_0297
Signal transduction histidine kinase.
  
     0.502
CSIRO_1147
Putative molecular chaperone.
  
    0.449
CSIRO_1818
ATP-dependent DNA ligase.
 
   
 0.425
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
    0.414
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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