STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2326G3E family GTPase. (336 aa)    
Predicted Functional Partners:
CSIRO_2327
methylmalonyl-CoA mutase.
 
 0.999
CSIRO_2329
methylmalonyl-CoA mutase.
 
 
 0.996
CSIRO_2735
methylmalonyl-CoA epimerase.
 
 
 0.856
CSIRO_2325
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
       0.800
CSIRO_1851
Glyoxalase family protein.
    
 0.731
CSIRO_3450
propionyl-CoA carboxylase beta chain.
 
  
  0.714
CSIRO_2309
acetyl-CoA hydrolase/transferase family protein.
  
 
 0.710
CSIRO_2134
4-hydroxyphenylpyruvate dioxygenase.
    
 0.655
CSIRO_2324
MFS family multidrug efflux protein.
       0.628
CSIRO_2328
Hypothetical protein.
       0.601
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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