Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_2329methylmalonyl-CoA mutase. (620 aa)    
Predicted Functional Partners:
CSIRO_2326
G3E family GTPase.
 
 0.999
CSIRO_2327
methylmalonyl-CoA mutase.
 
0.999
CSIRO_2735
methylmalonyl-CoA epimerase.
 
  
 0.971
CSIRO_2425
Biotin carboxylase.
    
 0.936
CSIRO_2309
acetyl-CoA hydrolase/transferase family protein.
  
 
 0.933
CSIRO_1851
Glyoxalase family protein.
    
 0.920
CSIRO_3432
Indolepyruvate ferredoxin oxidoreductase.
    
 0.910
CSIRO_2134
4-hydroxyphenylpyruvate dioxygenase.
    
 0.871
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.853
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
 0.851
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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