STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2338Ribulose-5-phosphate 4-epimerase-like protein. (259 aa)    
Predicted Functional Partners:
CSIRO_1454
Membrane c-type cytochrome cy.
  
 
  0.805
CSIRO_2124
Cytochrome c2.
  
 
  0.804
CSIRO_0317
Hypothetical protein.
    
 0.780
CSIRO_0289
DNA helicase.
    
  0.775
CSIRO_4234
DNA helicase.
    
  0.775
xylB
Xylulose kinase.
  
 
 0.763
CSIRO_1073
L-malyl-CoA/beta-methylmalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.754
CSIRO_2167
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
   
    0.754
CSIRO_1851
Glyoxalase family protein.
    
 0.700
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.692
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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