Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2368Phage DNA packaging protein. (417 aa)    
Predicted Functional Partners:
CSIRO_2370
Phage portal protein.
 
     0.840
CSIRO_2367
Hypothetical protein.
       0.837
CSIRO_2386
Hypothetical protein.
 
    0.835
CSIRO_2388
Hypothetical protein.
 
    0.821
CSIRO_2373
HK97 family phage prohead protease.
 
     0.818
CSIRO_2385
Hypothetical protein.
 
     0.811
CSIRO_2389
Hypothetical protein.
 
     0.810
CSIRO_2392
Host specificity protein.
     0.810
CSIRO_2390
FAD/FMN-containing dehydrogenase.
 
     0.809
CSIRO_2376
HK97 family phage major capsid protein.
 
     0.808
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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