Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2374Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CSIRO_2373
HK97 family phage prohead protease.
       0.773
CSIRO_1521
Hypothetical protein.
  
 
  0.767
nadE
NAD synthetase/ Glutamine amidotransferase chain of NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.693
tolA-2
TolA protein.
    
 0.586
CSIRO_3901
Hypothetical protein.
    
 0.586
CSIRO_0545
Putative acyl-CoA thioesterase precursor.
   
 0.552
CSIRO_0821
Arylesterase precursor.
   
 0.552
CSIRO_1264
Lipolytic enzyme.
   
 0.552
CSIRO_1265
Lipolytic enzyme.
   
 0.552
CSIRO_3094
Lipolytic enzyme.
   
 0.552
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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