ccmL protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccmL

Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase. (166 aa)

Predicted Functional Partners:

ccmF

0.985

ccmH

0.968

ccmE

0.967

ccmG

0.896

ccmC

0.854

ccmB

0.831

ccmA

0.794

CSIRO_2403

0.512

CSIRO_4097

0.511

CSIRO_2408

0.467

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2403	ccmE	CSIRO_2403	CSIRO_2405	Hypothetical protein.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.514
CSIRO_2403	ccmF	CSIRO_2403	CSIRO_2406	Hypothetical protein.	Cytochrome c heme lyase subunit CcmF.	0.514
CSIRO_2403	ccmH	CSIRO_2403	CSIRO_2404	Hypothetical protein.	Cytochrome c heme lyase subunit CcmH.	0.514
CSIRO_2403	ccmL	CSIRO_2403	CSIRO_2407	Hypothetical protein.	Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase.	0.512
CSIRO_2408	ccmE	CSIRO_2408	CSIRO_2405	Serine protease precursor; Belongs to the peptidase S1C family.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.451
CSIRO_2408	ccmF	CSIRO_2408	CSIRO_2406	Serine protease precursor; Belongs to the peptidase S1C family.	Cytochrome c heme lyase subunit CcmF.	0.451
CSIRO_2408	ccmH	CSIRO_2408	CSIRO_2404	Serine protease precursor; Belongs to the peptidase S1C family.	Cytochrome c heme lyase subunit CcmH.	0.602
CSIRO_2408	ccmL	CSIRO_2408	CSIRO_2407	Serine protease precursor; Belongs to the peptidase S1C family.	Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase.	0.467
CSIRO_4097	ccmF	CSIRO_4097	CSIRO_2406	Hypothetical protein.	Cytochrome c heme lyase subunit CcmF.	0.697
CSIRO_4097	ccmL	CSIRO_4097	CSIRO_2407	Hypothetical protein.	Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase.	0.511
ccmA	ccmB	CSIRO_0829	CSIRO_0830	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	ABC transporter CcmB subunit; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.999
ccmA	ccmC	CSIRO_0829	CSIRO_0831	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c-type biogenesis protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.998
ccmA	ccmE	CSIRO_0829	CSIRO_2405	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.859
ccmA	ccmF	CSIRO_0829	CSIRO_2406	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c heme lyase subunit CcmF.	0.743
ccmA	ccmG	CSIRO_0829	CSIRO_0833	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c-type biogenesis protein CcmG.	0.819
ccmA	ccmH	CSIRO_0829	CSIRO_2404	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c heme lyase subunit CcmH.	0.593
ccmA	ccmL	CSIRO_0829	CSIRO_2407	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase.	0.794
ccmB	ccmA	CSIRO_0830	CSIRO_0829	ABC transporter CcmB subunit; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	ABC transporter ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	0.999
ccmB	ccmC	CSIRO_0830	CSIRO_0831	ABC transporter CcmB subunit; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome c-type biogenesis protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.999
ccmB	ccmE	CSIRO_0830	CSIRO_2405	ABC transporter CcmB subunit; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.932