CSIRO_2414 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_2414

Extracellular solute-binding protein. (366 aa)

Predicted Functional Partners:

CSIRO_2365

0.885

CSIRO_4010

0.867

CSIRO_3010

0.811

CSIRO_3011

0.763

CSIRO_3420

0.753

CSIRO_3009

0.750

CSIRO_1919

0.738

CSIRO_2900

0.731

CSIRO_4108

0.730

pstS

0.727

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1919	CSIRO_2414	CSIRO_1919	CSIRO_2414	ABC-type tungstate transport system, ATP-binding protein.	Extracellular solute-binding protein.	0.738
CSIRO_1919	CSIRO_2900	CSIRO_1919	CSIRO_2900	ABC-type tungstate transport system, ATP-binding protein.	ABC transporter, periplasmic substrate-binding protein.	0.783
CSIRO_1919	CSIRO_3010	CSIRO_1919	CSIRO_3010	ABC-type tungstate transport system, ATP-binding protein.	Amino acid ABC transporter, permease protein.	0.983
CSIRO_1919	CSIRO_3011	CSIRO_1919	CSIRO_3011	ABC-type tungstate transport system, ATP-binding protein.	ABC-type amino acid transport system periplasmic component.	0.819
CSIRO_1919	CSIRO_4010	CSIRO_1919	CSIRO_4010	ABC-type tungstate transport system, ATP-binding protein.	ABC transporter permease protein.	0.861
CSIRO_1919	pstS	CSIRO_1919	CSIRO_2502	ABC-type tungstate transport system, ATP-binding protein.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.782
CSIRO_2365	CSIRO_2414	CSIRO_2365	CSIRO_2414	Sensory box histidine kinase/response regulator.	Extracellular solute-binding protein.	0.885
CSIRO_2365	CSIRO_3420	CSIRO_2365	CSIRO_3420	Sensory box histidine kinase/response regulator.	Quino(hemo)protein alcohol dehydrogenase.	0.534
CSIRO_2365	CSIRO_4108	CSIRO_2365	CSIRO_4108	Sensory box histidine kinase/response regulator.	Hypothetical protein.	0.999
CSIRO_2365	pstS	CSIRO_2365	CSIRO_2502	Sensory box histidine kinase/response regulator.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.418
CSIRO_2414	CSIRO_1919	CSIRO_2414	CSIRO_1919	Extracellular solute-binding protein.	ABC-type tungstate transport system, ATP-binding protein.	0.738
CSIRO_2414	CSIRO_2365	CSIRO_2414	CSIRO_2365	Extracellular solute-binding protein.	Sensory box histidine kinase/response regulator.	0.885
CSIRO_2414	CSIRO_2900	CSIRO_2414	CSIRO_2900	Extracellular solute-binding protein.	ABC transporter, periplasmic substrate-binding protein.	0.731
CSIRO_2414	CSIRO_3009	CSIRO_2414	CSIRO_3009	Extracellular solute-binding protein.	ABC transporter related protein.	0.750
CSIRO_2414	CSIRO_3010	CSIRO_2414	CSIRO_3010	Extracellular solute-binding protein.	Amino acid ABC transporter, permease protein.	0.811
CSIRO_2414	CSIRO_3011	CSIRO_2414	CSIRO_3011	Extracellular solute-binding protein.	ABC-type amino acid transport system periplasmic component.	0.763
CSIRO_2414	CSIRO_3420	CSIRO_2414	CSIRO_3420	Extracellular solute-binding protein.	Quino(hemo)protein alcohol dehydrogenase.	0.753
CSIRO_2414	CSIRO_4010	CSIRO_2414	CSIRO_4010	Extracellular solute-binding protein.	ABC transporter permease protein.	0.867
CSIRO_2414	CSIRO_4108	CSIRO_2414	CSIRO_4108	Extracellular solute-binding protein.	Hypothetical protein.	0.730
CSIRO_2414	pstS	CSIRO_2414	CSIRO_2502	Extracellular solute-binding protein.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.727