Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppFOligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (350 aa)    
Predicted Functional Partners:
CSIRO_2423
Putative glutathione transporter, permease component.
 0.996
CSIRO_2069
Putative dipeptide ABC transporter.
 0.993
CSIRO_2422
Putative glutathione transporter, permease component.
 
 0.992
CSIRO_2421
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
 
 0.988
dppB
Dipeptide transport system permease protein DppB.
 
 0.982
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 
0.958
CSIRO_2070
Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
 
0.915
CSIRO_2067
ABC transporter substrate-binding protein.
 
 0.905
CSIRO_2900
ABC transporter, periplasmic substrate-binding protein.
  
 
 0.830
CSIRO_1457
Oligopeptide/dipeptide uptake family ABC transporter.
 
  
 0.801
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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