CSIRO_2443 protein (Bradyrhizobiaceae bacterium SG6C)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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textmining

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Score

CSIRO_2443

TRAP transporter solute receptor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (362 aa)

Predicted Functional Partners:

dctM

0.898

CSIRO_2445

0.898

dctQ

0.875

CSIRO_2446

0.875

CSIRO_1008

0.851

CSIRO_1007

0.846

CSIRO_1639

0.670

CSIRO_4004

0.670

CSIRO_1637

0.549

CSIRO_4002

0.538

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1007	CSIRO_1008	CSIRO_1007	CSIRO_1008	Putative DctQ-like TRAP transporter.	TRAP-type C4-dicarboxylate transport system.	0.993
CSIRO_1007	CSIRO_1637	CSIRO_1007	CSIRO_1637	Putative DctQ-like TRAP transporter.	TRAP dicarboxylate transporter DctM subunit.	0.794
CSIRO_1007	CSIRO_1639	CSIRO_1007	CSIRO_1639	Putative DctQ-like TRAP transporter.	TRAP transporter solute receptor.	0.568
CSIRO_1007	CSIRO_2443	CSIRO_1007	CSIRO_2443	Putative DctQ-like TRAP transporter.	TRAP transporter solute receptor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.846
CSIRO_1007	CSIRO_2445	CSIRO_1007	CSIRO_2445	Putative DctQ-like TRAP transporter.	TRAP dicarboxylate transporter.	0.866
CSIRO_1007	CSIRO_4002	CSIRO_1007	CSIRO_4002	Putative DctQ-like TRAP transporter.	TRAP-like C4-dicarboxylate transport system, large permease component.	0.657
CSIRO_1007	CSIRO_4004	CSIRO_1007	CSIRO_4004	Putative DctQ-like TRAP transporter.	TRAP-like C4-dicarboxylate transport system, periplasmic component.	0.531
CSIRO_1007	dctM	CSIRO_1007	CSIRO_0459	Putative DctQ-like TRAP transporter.	TRAP dicarboxylate transporter, DctM subunit.	0.913
CSIRO_1008	CSIRO_1007	CSIRO_1008	CSIRO_1007	TRAP-type C4-dicarboxylate transport system.	Putative DctQ-like TRAP transporter.	0.993
CSIRO_1008	CSIRO_1637	CSIRO_1008	CSIRO_1637	TRAP-type C4-dicarboxylate transport system.	TRAP dicarboxylate transporter DctM subunit.	0.663
CSIRO_1008	CSIRO_1639	CSIRO_1008	CSIRO_1639	TRAP-type C4-dicarboxylate transport system.	TRAP transporter solute receptor.	0.694
CSIRO_1008	CSIRO_2443	CSIRO_1008	CSIRO_2443	TRAP-type C4-dicarboxylate transport system.	TRAP transporter solute receptor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.851
CSIRO_1008	CSIRO_2446	CSIRO_1008	CSIRO_2446	TRAP-type C4-dicarboxylate transport system.	TRAP dicarboxylate transporter.	0.856
CSIRO_1008	CSIRO_4002	CSIRO_1008	CSIRO_4002	TRAP-type C4-dicarboxylate transport system.	TRAP-like C4-dicarboxylate transport system, large permease component.	0.691
CSIRO_1008	CSIRO_4004	CSIRO_1008	CSIRO_4004	TRAP-type C4-dicarboxylate transport system.	TRAP-like C4-dicarboxylate transport system, periplasmic component.	0.812
CSIRO_1008	dctQ	CSIRO_1008	CSIRO_0460	TRAP-type C4-dicarboxylate transport system.	TRAP dicarboxylate transporter, DctQ subunit.	0.888
CSIRO_1637	CSIRO_1007	CSIRO_1637	CSIRO_1007	TRAP dicarboxylate transporter DctM subunit.	Putative DctQ-like TRAP transporter.	0.794
CSIRO_1637	CSIRO_1008	CSIRO_1637	CSIRO_1008	TRAP dicarboxylate transporter DctM subunit.	TRAP-type C4-dicarboxylate transport system.	0.663
CSIRO_1637	CSIRO_1639	CSIRO_1637	CSIRO_1639	TRAP dicarboxylate transporter DctM subunit.	TRAP transporter solute receptor.	0.995
CSIRO_1637	CSIRO_2443	CSIRO_1637	CSIRO_2443	TRAP dicarboxylate transporter DctM subunit.	TRAP transporter solute receptor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.549