rpiA protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpiA

Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (233 aa)

Predicted Functional Partners:

CSIRO_3669

0.939

CSIRO_0506

0.919

prs

0.836

tal

0.829

CSIRO_3979

0.828

CSIRO_0557

0.816

xylB

0.766

CSIRO_2812

0.762

CSIRO_2452

0.752

CSIRO_2453

0.708

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0506	CSIRO_0557	CSIRO_0506	CSIRO_0557	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	0.813
CSIRO_0506	CSIRO_2453	CSIRO_0506	CSIRO_2453	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.651
CSIRO_0506	CSIRO_2812	CSIRO_0506	CSIRO_2812	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.900
CSIRO_0506	CSIRO_3669	CSIRO_0506	CSIRO_3669	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.971
CSIRO_0506	CSIRO_3979	CSIRO_0506	CSIRO_3979	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.805
CSIRO_0506	prs	CSIRO_0506	CSIRO_0225	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.	0.895
CSIRO_0506	rpiA	CSIRO_0506	CSIRO_2451	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.	0.919
CSIRO_0506	tal	CSIRO_0506	CSIRO_2102	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Transaldolase/ glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.	0.999
CSIRO_0506	xylB	CSIRO_0506	CSIRO_2034	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	Xylulose kinase.	0.827
CSIRO_0557	CSIRO_0506	CSIRO_0557	CSIRO_0506	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.813
CSIRO_0557	CSIRO_2812	CSIRO_0557	CSIRO_2812	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.440
CSIRO_0557	prs	CSIRO_0557	CSIRO_0225	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.	0.814
CSIRO_0557	rpiA	CSIRO_0557	CSIRO_2451	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.	0.816
CSIRO_0557	tal	CSIRO_0557	CSIRO_2102	Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.	Transaldolase/ glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.	0.884
CSIRO_2452	CSIRO_2453	CSIRO_2452	CSIRO_2453	Hypothetical protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.763
CSIRO_2452	rpiA	CSIRO_2452	CSIRO_2451	Hypothetical protein.	Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.	0.752
CSIRO_2453	CSIRO_0506	CSIRO_2453	CSIRO_0506	Glutathione reductase; Maintains high levels of reduced glutathione.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.651
CSIRO_2453	CSIRO_2452	CSIRO_2453	CSIRO_2452	Glutathione reductase; Maintains high levels of reduced glutathione.	Hypothetical protein.	0.763
CSIRO_2453	CSIRO_2812	CSIRO_2453	CSIRO_2812	Glutathione reductase; Maintains high levels of reduced glutathione.	Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.999
CSIRO_2453	CSIRO_3979	CSIRO_2453	CSIRO_3979	Glutathione reductase; Maintains high levels of reduced glutathione.	Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.889