CSIRO_2473 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_2473

Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (370 aa)

Predicted Functional Partners:

potI

0.999

potH

0.995

potG

0.990

CSIRO_2471

0.797

CSIRO_2472

0.796

CSIRO_4010

0.718

CSIRO_2900

0.660

lptB

0.653

cysA

0.644

znuB

0.639

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2471	CSIRO_2472	CSIRO_2471	CSIRO_2472	Hypothetical protein.	Aspartate aminotransferase.	0.873
CSIRO_2471	CSIRO_2473	CSIRO_2471	CSIRO_2473	Hypothetical protein.	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.797
CSIRO_2472	CSIRO_2471	CSIRO_2472	CSIRO_2471	Aspartate aminotransferase.	Hypothetical protein.	0.873
CSIRO_2472	CSIRO_2473	CSIRO_2472	CSIRO_2473	Aspartate aminotransferase.	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.796
CSIRO_2473	CSIRO_2471	CSIRO_2473	CSIRO_2471	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Hypothetical protein.	0.797
CSIRO_2473	CSIRO_2472	CSIRO_2473	CSIRO_2472	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Aspartate aminotransferase.	0.796
CSIRO_2473	CSIRO_2900	CSIRO_2473	CSIRO_2900	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC transporter, periplasmic substrate-binding protein.	0.660
CSIRO_2473	CSIRO_4010	CSIRO_2473	CSIRO_4010	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC transporter permease protein.	0.718
CSIRO_2473	cysA	CSIRO_2473	CSIRO_1520	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Sulfate and thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.644
CSIRO_2473	lptB	CSIRO_2473	CSIRO_0855	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Lipopolysaccharide ABC transporter ATP-binding protein LptB.	0.653
CSIRO_2473	potG	CSIRO_2473	CSIRO_0356	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.990
CSIRO_2473	potH	CSIRO_2473	CSIRO_0355	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Putrescine transport system permease protein PotH.	0.995
CSIRO_2473	potI	CSIRO_2473	CSIRO_0354	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Putrescine transport system permease protein PotI.	0.999
CSIRO_2473	znuB	CSIRO_2473	CSIRO_1628	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Zinc ABC transporter inner membrane permease protein ZnuB.	0.639
CSIRO_2900	CSIRO_2473	CSIRO_2900	CSIRO_2473	ABC transporter, periplasmic substrate-binding protein.	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.660
CSIRO_2900	CSIRO_4010	CSIRO_2900	CSIRO_4010	ABC transporter, periplasmic substrate-binding protein.	ABC transporter permease protein.	0.882
CSIRO_2900	cysA	CSIRO_2900	CSIRO_1520	ABC transporter, periplasmic substrate-binding protein.	Sulfate and thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.875
CSIRO_2900	lptB	CSIRO_2900	CSIRO_0855	ABC transporter, periplasmic substrate-binding protein.	Lipopolysaccharide ABC transporter ATP-binding protein LptB.	0.875
CSIRO_2900	potG	CSIRO_2900	CSIRO_0356	ABC transporter, periplasmic substrate-binding protein.	Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.875
CSIRO_2900	potH	CSIRO_2900	CSIRO_0355	ABC transporter, periplasmic substrate-binding protein.	Putrescine transport system permease protein PotH.	0.546

page 1 of 4

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About