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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2516D-beta-hydroxybutyrate dehydrogenase. (292 aa)    
Predicted Functional Partners:
CSIRO_2517
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.836
CSIRO_2518
Putative pyridoxine biosynthesis protein.
 
  
 0.834
CSIRO_2515
Ribulose-5-phosphate 4-epimerase-like protein.
 
  
 0.704
CSIRO_2230
Putative acetyl-CoA synthetase.
    
  0.677
CSIRO_3947
Fe-S protein.
    
  0.673
CSIRO_2536
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.640
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
  
 
 0.638
CSIRO_4180
Glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.626
CSIRO_1307
enoyl-CoA hydratase/ 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase; Bifunctional; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
 0.616
CSIRO_1439
Bifunctional; enoyl-CoA hydratase/ delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/ 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
 0.616
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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