STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2518Putative pyridoxine biosynthesis protein. (424 aa)    
Predicted Functional Partners:
CSIRO_2515
Ribulose-5-phosphate 4-epimerase-like protein.
 
 0.976
CSIRO_2517
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.926
CSIRO_2516
D-beta-hydroxybutyrate dehydrogenase.
 
  
 0.834
CSIRO_2269
Hypothetical protein.
 
     0.674
CSIRO_2257
Altronate hydrolase.
 
     0.667
CSIRO_4181
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.640
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
    
  0.619
CSIRO_0613
Hypothetical protein.
 
     0.479
CSIRO_2338
Ribulose-5-phosphate 4-epimerase-like protein.
  
 
 0.471
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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