Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2559WD40-like repeat-containing protein. (212 aa)    
Predicted Functional Partners:
CSIRO_2560
Hypothetical protein.
 
     0.937
CSIRO_2561
Hypothetical protein.
 
     0.791
CSIRO_1880
2-methylcitrate synthase; Belongs to the citrate synthase family.
     
  0.507
CSIRO_2764
Citrate synthase; Belongs to the citrate synthase family.
     
  0.507
CSIRO_2562
Hypothetical protein.
       0.499
CSIRO_3728
TolA protein.
  
  
  0.486
CSIRO_2328
Hypothetical protein.
  
     0.483
CSIRO_1180
DMT superfamily permease.
  
     0.478
CSIRO_1831
Hypothetical protein.
  
     0.443
CSIRO_2999
Glutathione S-transferase.
  
     0.400
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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