STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2559WD40-like repeat-containing protein. (212 aa)    
Predicted Functional Partners:
CSIRO_2560
Hypothetical protein.
 
     0.931
CSIRO_2561
Hypothetical protein.
 
     0.778
CSIRO_0639
ATP-dependent DNA helicase.
     
 0.633
CSIRO_0778
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
     
 0.633
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
     
 0.633
CSIRO_3149
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
     
 0.633
CSIRO_2328
Hypothetical protein.
  
     0.483
CSIRO_1180
DMT superfamily permease.
  
     0.478
CSIRO_2562
Hypothetical protein.
       0.475
CSIRO_1831
Hypothetical protein.
  
     0.443
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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