STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2607Phenylacetic acid degradation protein. (149 aa)    
Predicted Functional Partners:
CSIRO_2606
Transcriptional regulator, TetR family.
       0.800
CSIRO_3935
Phenylacetate-coenzyme A ligase.
 
  
 0.704
CSIRO_3295
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.673
CSIRO_2605
Hypothetical protein.
       0.553
CSIRO_1015
Hypothetical protein.
    
  0.522
CSIRO_4217
High-affinity branched-chain amino acid transport ATP-binding protein.
  
  
  0.480
CSIRO_3930
long-chain-fatty-acid--CoA ligase.
 
     0.473
CSIRO_3934
ABC transporter substrate-binding protein.
  
  
  0.466
CSIRO_1692
Thioesterase superfamily.
     
 0.404
CSIRO_1882
acyl-CoA hydrolase.
     
 0.404
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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