rplI protein (Bradyrhizobiaceae bacterium SG6C)

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second shell of interactors

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gene neighborhood

gene fusions

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Score

rplI

LSU ribosomal protein L9p; Binds to the 23S rRNA. (200 aa)

Predicted Functional Partners:

rpsR

0.998

rpsF

0.998

rplY

0.997

rplU

0.997

rpsB

0.997

rplM

0.997

rplQ

0.997

rpsQ

0.997

rplP

0.997

rplV

0.997

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplM	CSIRO_2608	CSIRO_3219	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplI	rplP	CSIRO_2608	CSIRO_3493	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L16p; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.997
rplI	rplQ	CSIRO_2608	CSIRO_3475	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L17p.	0.997
rplI	rplU	CSIRO_2608	CSIRO_0786	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplI	rplV	CSIRO_2608	CSIRO_3495	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.997
rplI	rplY	CSIRO_2608	CSIRO_0213	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L25p; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.997
rplI	rpsB	CSIRO_2608	CSIRO_2750	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.997
rplI	rpsF	CSIRO_2608	CSIRO_2611	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.998
rplI	rpsQ	CSIRO_2608	CSIRO_3491	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
rplI	rpsR	CSIRO_2608	CSIRO_2610	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.998
rplM	rplI	CSIRO_3219	CSIRO_2608	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L9p; Binds to the 23S rRNA.	0.997
rplM	rplP	CSIRO_3219	CSIRO_3493	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L16p; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplM	rplQ	CSIRO_3219	CSIRO_3475	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L17p.	0.998
rplM	rplU	CSIRO_3219	CSIRO_0786	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rplV	CSIRO_3219	CSIRO_3495	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplM	rplY	CSIRO_3219	CSIRO_0213	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L25p; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.996
rplM	rpsB	CSIRO_3219	CSIRO_2750	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.999
rplM	rpsF	CSIRO_3219	CSIRO_2611	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.996
rplM	rpsQ	CSIRO_3219	CSIRO_3491	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998
rplM	rpsR	CSIRO_3219	CSIRO_2610	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.998