STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOuter membrane protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (791 aa)    
Predicted Functional Partners:
CSIRO_0856
Hypothetical protein.
 
 0.983
CSIRO_2629
Permease.
 
 
 0.951
CSIRO_3258
Putative permease.
 
 
 0.878
surA
Peptidyl-prolyl cis-trans isomerase SurA.
 
  
 0.796
lptB
Lipopolysaccharide ABC transporter ATP-binding protein LptB.
 
 
 0.789
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.771
CSIRO_0857
Hypothetical protein.
 
   
 0.762
ppiD
Peptidyl-prolyl cis-trans isomerase PpiD.
 
  
 0.749
CSIRO_4260
Hypothetical protein.
  
     0.726
CSIRO_0851
Hypothetical protein.
  
   
 0.719
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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