Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2665Hypothetical protein. (324 aa)    
Predicted Functional Partners:
CSIRO_2664
Hypothetical protein.
       0.730
CSIRO_2668
ErfK/YbiS/YcfS/YnhG-like protein.
 
     0.582
CSIRO_2666
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.486
CSIRO_3262
Hypothetical protein.
 
 
 0.451
CSIRO_0468
Hypothetical protein.
  
     0.450
CSIRO_0810
Hypothetical protein.
  
     0.447
CSIRO_2339
Hypothetical protein.
  
 
  0.443
CSIRO_2818
Serine/threonine kinase.
 
  
  0.441
CSIRO_4264
Hypothetical protein.
  
     0.424
CSIRO_0506
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.413
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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