STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2691Hypothetical protein. (278 aa)    
Predicted Functional Partners:
CSIRO_3509
Phospholipid-lipopolysaccharide ABC transporter.
  
  
  0.782
exoR
Exopolysacchride production negative regulator exoR.
  
     0.768
CSIRO_0415
Sel1 domain-containing protein.
  
     0.767
msbA
Lipid A export ATP-binding/permease protein MsbA.
  
  
  0.764
CSIRO_1399
Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.692
CSIRO_2690
Hypothetical protein.
       0.615
CSIRO_2689
Diguanylate phosphodiesterase.
    
  0.538
CSIRO_4108
Hypothetical protein.
   
 0.467
CSIRO_0741
Two-component sensor histidine kinase.
    
 0.437
CSIRO_0920
Two-component hybrid sensor and regulator.
    
 0.437
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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