Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_2735methylmalonyl-CoA epimerase. (134 aa)    
Predicted Functional Partners:
CSIRO_2327
methylmalonyl-CoA mutase.
 
  
 0.977
CSIRO_2329
methylmalonyl-CoA mutase.
 
  
 0.971
CSIRO_3450
propionyl-CoA carboxylase beta chain.
 
 
 0.904
CSIRO_2326
G3E family GTPase.
 
 
 0.858
nuoI
NADH-ubiquinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
  0.858
CSIRO_2736
Protein of unknown function DUF1467.
       0.834
CSIRO_3954
geranyl-CoA carboxylase carboxyl transferase subunit.
  
 
 0.829
CSIRO_2295
propionyl-CoA carboxylase beta chain.
 
 
 0.812
CSIRO_3411
Biotin carboxylase/ Biotin carboxyl carrier protein.
    
 0.811
CSIRO_2733
Biotin-protein ligase.
  
    0.795
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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