Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2767ComEC/Rec2-related protein. (284 aa)    
Predicted Functional Partners:
CSIRO_2789
Competence protein.
 
     0.974
smf
Rossmann fold nucleotide-binding protein Smf.
 
  
 0.651
CSIRO_3165
Hypothetical protein.
  
     0.614
CSIRO_4092
Hypothetical protein.
  
     0.611
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.589
CSIRO_1104
ATP-dependent nuclease subunit B.
  
     0.558
CSIRO_0452
Hypothetical protein.
  
     0.555
CSIRO_0948
DNA polymerase III delta subunit.
 
   
 0.537
CSIRO_2768
Phage integrase; Belongs to the 'phage' integrase family.
 
     0.535
CSIRO_0662
Competence protein F-like protein.
 
  
 0.531
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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