STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2817Putative serine/threonine phosphatase. (246 aa)    
Predicted Functional Partners:
CSIRO_2818
Serine/threonine kinase.
 
   
 0.945
CSIRO_0317
Hypothetical protein.
    
 
 0.891
rdgB
Nucleoside 5-triphosphatase RdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.707
rcsF
Protein RcsF.
  
  
 0.707
CSIRO_2816
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
       0.557
CSIRO_2819
Hypothetical protein.
       0.542
CSIRO_1818
ATP-dependent DNA ligase.
    
 
 0.436
CSIRO_2815
Hypothetical protein.
       0.412
CSIRO_3414
Alkyl hydroperoxide reductase subunit C-like protein.
   
 
 0.409
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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