exoR protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

exoR

Exopolysacchride production negative regulator exoR. (277 aa)

Predicted Functional Partners:

ilvD-2

0.807

CSIRO_2691

0.768

dnaK

0.760

CSIRO_1849

0.752

CSIRO_3583

0.689

CSIRO_1316

0.663

flgC

0.656

chvG

0.651

CSIRO_3600

0.646

CSIRO_1399

0.629

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1316	CSIRO_3583	CSIRO_1316	CSIRO_3583	Signal recognition particle GTPase.	Hypothetical protein.	0.773
CSIRO_1316	CSIRO_3600	CSIRO_1316	CSIRO_3600	Signal recognition particle GTPase.	Hypothetical protein.	0.773
CSIRO_1316	chvG	CSIRO_1316	CSIRO_0582	Signal recognition particle GTPase.	Sensor histidine kinase ChvG.	0.589
CSIRO_1316	exoR	CSIRO_1316	CSIRO_2821	Signal recognition particle GTPase.	Exopolysacchride production negative regulator exoR.	0.663
CSIRO_1399	CSIRO_2691	CSIRO_1399	CSIRO_2691	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Hypothetical protein.	0.629
CSIRO_1399	dnaK	CSIRO_1399	CSIRO_0890	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.511
CSIRO_1399	exoR	CSIRO_1399	CSIRO_2821	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Exopolysacchride production negative regulator exoR.	0.629
CSIRO_1849	CSIRO_2691	CSIRO_1849	CSIRO_2691	Acetylspermidine deacetylase.	Hypothetical protein.	0.752
CSIRO_1849	dnaK	CSIRO_1849	CSIRO_0890	Acetylspermidine deacetylase.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.796
CSIRO_1849	exoR	CSIRO_1849	CSIRO_2821	Acetylspermidine deacetylase.	Exopolysacchride production negative regulator exoR.	0.752
CSIRO_2691	CSIRO_1399	CSIRO_2691	CSIRO_1399	Hypothetical protein.	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.629
CSIRO_2691	CSIRO_1849	CSIRO_2691	CSIRO_1849	Hypothetical protein.	Acetylspermidine deacetylase.	0.752
CSIRO_2691	dnaK	CSIRO_2691	CSIRO_0890	Hypothetical protein.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.760
CSIRO_2691	exoR	CSIRO_2691	CSIRO_2821	Hypothetical protein.	Exopolysacchride production negative regulator exoR.	0.768
CSIRO_2691	flgC	CSIRO_2691	CSIRO_3760	Hypothetical protein.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.656
CSIRO_3583	CSIRO_1316	CSIRO_3583	CSIRO_1316	Hypothetical protein.	Signal recognition particle GTPase.	0.773
CSIRO_3583	CSIRO_3600	CSIRO_3583	CSIRO_3600	Hypothetical protein.	Hypothetical protein.	0.772
CSIRO_3583	chvG	CSIRO_3583	CSIRO_0582	Hypothetical protein.	Sensor histidine kinase ChvG.	0.474
CSIRO_3583	exoR	CSIRO_3583	CSIRO_2821	Hypothetical protein.	Exopolysacchride production negative regulator exoR.	0.689
CSIRO_3600	CSIRO_1316	CSIRO_3600	CSIRO_1316	Hypothetical protein.	Signal recognition particle GTPase.	0.773