Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2899AMP-dependent synthetase and ligase. (511 aa)    
Predicted Functional Partners:
CSIRO_2900
ABC transporter, periplasmic substrate-binding protein.
 
  
  0.858
CSIRO_3594
Hypothetical protein.
  
     0.755
CSIRO_2352
Hypothetical protein.
  
     0.744
CSIRO_2403
Hypothetical protein.
  
     0.741
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.723
CSIRO_2479
Acyl carrier protein.
  
 0.721
CSIRO_3016
Phosphatidylglycerophosphatase B.
  
 
  0.710
CSIRO_3567
Hpt domain-containing protein.
  
  
  0.704
rplF
LSU ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.698
CSIRO_3784
Hypothetical protein.
  
     0.697
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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