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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2900ABC transporter, periplasmic substrate-binding protein. (575 aa)    
Predicted Functional Partners:
CSIRO_1456
Oligopeptide transport system permease protein.
 
 
 0.937
CSIRO_1457
Oligopeptide/dipeptide uptake family ABC transporter.
 
 
 0.934
CSIRO_1458
Oligopeptide transport system permease protein; Belongs to the ABC transporter superfamily.
 
 
 0.921
CSIRO_2070
Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.875
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.826
CSIRO_2899
AMP-dependent synthetase and ligase.
 
    0.826
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.814
CSIRO_2422
Putative glutathione transporter, permease component.
 
 
 0.812
CSIRO_2421
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
 
 
 0.775
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 
 0.766
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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