Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2917Nitrate ABC transporter, ATP-binding protein. (263 aa)    
Predicted Functional Partners:
CSIRO_2916
Nitrate ABC transporter, permease protein.
 
 0.996
CSIRO_2915
Nitrate ABC transporter, nitrate-binding protein.
 0.994
CSIRO_2522
Cyanate ABC transporter, substrate binding protein.
 0.981
CSIRO_2914
Nitrate ABC transporter, nitrate-binding protein.
 0.978
CSIRO_2922
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.978
CSIRO_2521
Cyanate ABC transporter, permease protein.
 
 0.977
CSIRO_2918
Nitrite reductase [NAD(P)H] large subunit.
 
  
 0.933
CSIRO_0086
ABC-type nitrate/sulfonate/bicarbonate transport system.
 
 0.904
CSIRO_0604
Transport system inner membrane component.
 0.857
CSIRO_4010
ABC transporter permease protein.
    
 0.853
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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