STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2933HlyD family secretion protein. (465 aa)    
Predicted Functional Partners:
CSIRO_2959
ABC transporter.
 0.977
CSIRO_2932
HlyB/MsbA family ABC transporter.
  
 0.951
CSIRO_2958
Agglutination protein.
 
 0.864
CSIRO_2431
Type I secretion system ATPase.
  
 0.793
CSIRO_2308
TolC precursor.
 
 0.741
CSIRO_2934
Sdenylate cyclase.
       0.722
CSIRO_2990
Type I secretion outer membrane protein.
  
 0.708
CSIRO_3005
NodT family RND efflux system.
  
 0.708
CSIRO_4141
Hypothetical protein.
  
 0.693
CSIRO_2963
Flagellar hook-length control protein.
 
 
 0.689
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.