Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_2957Maltodextrin glucosidase. (530 aa)    
Predicted Functional Partners:
CSIRO_1144
HAD-superfamily hydrolase subfamily IA, variant 3.
 
 
 0.858
CSIRO_0770
Trehalose-6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.812
CSIRO_0768
UDP forming alpha-trehalose-phosphate synthase.
 
 
 0.801
CSIRO_0769
Glucoamylase.
 
  
 0.773
CSIRO_0280
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.744
CSIRO_3262
Hypothetical protein.
   
 0.733
CSIRO_2883
Beta-(1-3)-glucosyl transferase.
     
 0.699
CSIRO_0785
Hypothetical protein.
    
 0.698
CSIRO_0557
Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.
    
 0.689
CSIRO_2032
Maltose operon transcriptional repressor MalR.
 
 
 0.673
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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