STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2959ABC transporter. (739 aa)    
Predicted Functional Partners:
CSIRO_2960
HlyD family secretion protein.
 0.993
CSIRO_2432
Type I secretion membrane fusion protein.
 0.981
CSIRO_2933
HlyD family secretion protein.
 0.977
CSIRO_2958
Agglutination protein.
 
 
 0.940
CSIRO_3862
ABC transporter related protein.
 
 
0.895
msbA
Lipid A export ATP-binding/permease protein MsbA.
 
 
0.892
CSIRO_1394
ABC-type multidrug transport system.
   
0.887
ndvA
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
0.887
CSIRO_3509
Phospholipid-lipopolysaccharide ABC transporter.
   
0.887
CSIRO_4085
ABC transporter HlyB/MsbA family.
   
0.887
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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