Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2959ABC transporter. (739 aa)    
Predicted Functional Partners:
CSIRO_2960
HlyD family secretion protein.
 0.990
CSIRO_2432
Type I secretion membrane fusion protein.
 
 0.967
CSIRO_2933
HlyD family secretion protein.
 
 0.959
CSIRO_2958
Agglutination protein.
 
 
 0.946
CSIRO_2431
Type I secretion system ATPase.
  
  
 
0.872
CSIRO_2932
HlyB/MsbA family ABC transporter.
  
  
 
0.865
CSIRO_2963
Flagellar hook-length control protein.
 
 
 0.844
CSIRO_2308
TolC precursor.
 
 
 0.829
CSIRO_2990
Type I secretion outer membrane protein.
 
 
 0.825
CSIRO_2961
Hypothetical protein.
 
   
 0.821
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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