Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ntrYNitrogen regulation protein NtrY. (756 aa)    
Predicted Functional Partners:
CSIRO_2977
Transcriptional regulator, Fis family.
 
 
 0.985
CSIRO_4108
Hypothetical protein.
   
 0.945
CSIRO_2365
Sensory box histidine kinase/response regulator.
   
 0.941
ntrC
Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 
 0.856
CSIRO_2976
D-alanine aminotransferase.
     
 0.815
cheA
Signal transduction histidine kinase CheA.
   
 0.811
CSIRO_2980
Nitrogen regulation protein NR(II).
 
  
0.800
CSIRO_3755
Multi-sensor hybrid histidine kinase.
   
 0.800
CSIRO_0920
Two-component hybrid sensor and regulator.
 
 
 0.795
CSIRO_1808
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.769
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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