Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_2980Nitrogen regulation protein NR(II). (391 aa)    
Predicted Functional Partners:
ntrC
Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.997
CSIRO_2365
Sensory box histidine kinase/response regulator.
  
 0.988
CSIRO_3203
Nitrogen regulatory protein; Belongs to the P(II) protein family.
  
 0.943
CSIRO_4108
Hypothetical protein.
   
 0.942
CSIRO_2977
Transcriptional regulator, Fis family.
 
 0.906
CSIRO_2981
tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.893
CSIRO_0961
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.883
CSIRO_0963
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.883
CSIRO_2523
Transcriptional regulator.
 
 
 0.865
CSIRO_0741
Two-component sensor histidine kinase.
   
 0.858
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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