CSIRO_2981 protein (Bradyrhizobiaceae bacterium SG6C)

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CSIRO_2981

tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (333 aa)

Predicted Functional Partners:

CSIRO_2980

0.893

ntrC

0.840

trmD

0.710

rimM

0.686

rpsP

0.646

ntrY

0.614

CSIRO_2976

0.600

rpsT

0.597

rplU

0.596

rpsJ

0.596

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2976	CSIRO_2980	CSIRO_2976	CSIRO_2980	D-alanine aminotransferase.	Nitrogen regulation protein NR(II).	0.563
CSIRO_2976	CSIRO_2981	CSIRO_2976	CSIRO_2981	D-alanine aminotransferase.	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.600
CSIRO_2976	ntrC	CSIRO_2976	CSIRO_2979	D-alanine aminotransferase.	Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	0.564
CSIRO_2976	ntrY	CSIRO_2976	CSIRO_2978	D-alanine aminotransferase.	Nitrogen regulation protein NtrY.	0.815
CSIRO_2980	CSIRO_2976	CSIRO_2980	CSIRO_2976	Nitrogen regulation protein NR(II).	D-alanine aminotransferase.	0.563
CSIRO_2980	CSIRO_2981	CSIRO_2980	CSIRO_2981	Nitrogen regulation protein NR(II).	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.893
CSIRO_2980	ntrC	CSIRO_2980	CSIRO_2979	Nitrogen regulation protein NR(II).	Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	0.997
CSIRO_2980	ntrY	CSIRO_2980	CSIRO_2978	Nitrogen regulation protein NR(II).	Nitrogen regulation protein NtrY.	0.800
CSIRO_2981	CSIRO_2976	CSIRO_2981	CSIRO_2976	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	D-alanine aminotransferase.	0.600
CSIRO_2981	CSIRO_2980	CSIRO_2981	CSIRO_2980	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Nitrogen regulation protein NR(II).	0.893
CSIRO_2981	ntrC	CSIRO_2981	CSIRO_2979	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	0.840
CSIRO_2981	ntrY	CSIRO_2981	CSIRO_2978	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Nitrogen regulation protein NtrY.	0.614
CSIRO_2981	rimM	CSIRO_2981	CSIRO_1084	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.686
CSIRO_2981	rplU	CSIRO_2981	CSIRO_0786	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.596
CSIRO_2981	rpsJ	CSIRO_2981	CSIRO_3501	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	SSU ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.596
CSIRO_2981	rpsP	CSIRO_2981	CSIRO_1085	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.646
CSIRO_2981	rpsT	CSIRO_2981	CSIRO_1172	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.597
CSIRO_2981	trmD	CSIRO_2981	CSIRO_1083	tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	tRNA (Guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.710
ntrC	CSIRO_2976	CSIRO_2979	CSIRO_2976	Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	D-alanine aminotransferase.	0.564
ntrC	CSIRO_2980	CSIRO_2979	CSIRO_2980	Nitrogen assimilation regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	Nitrogen regulation protein NR(II).	0.997

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