STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyDSecretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (443 aa)    
Predicted Functional Partners:
CSIRO_3005
NodT family RND efflux system.
 
 0.975
CSIRO_3002
RND multidrug efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.941
CSIRO_3003
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.941
CSIRO_2824
RND multidrug efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.888
CSIRO_2047
RND efflux system protein.
 
  0.882
CSIRO_2056
RND efflux system protein.
 
  0.879
CSIRO_2164
Acriflavin resistance protein.
 
  0.876
cmeB
RND efflux system CmeB.
 
  0.873
CSIRO_2195
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.809
CSIRO_2679
Cobalt-zinc-cadmium resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.779
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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