STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3070Hypothetical protein. (610 aa)    
Predicted Functional Partners:
tolA-2
TolA protein.
    
 
 0.871
CSIRO_3901
Hypothetical protein.
    
 
 0.871
CSIRO_3069
Hypothetical protein.
       0.701
cheA
Signal transduction histidine kinase CheA.
     
 0.682
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.681
phoR
Phosphate regulon sensor protein PhoR.
   
 
  0.610
CSIRO_2957
Maltodextrin glucosidase.
     
 0.607
CSIRO_1497
DNA-directed RNA polymerase specialized sigma subunit.
    
 0.564
CSIRO_3071
Hypothetical protein.
       0.554
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.535
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.