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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3104Branched-chain amino acid ABC transporter, amino acid-binding protein. (388 aa)    
Predicted Functional Partners:
CSIRO_3101
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.936
CSIRO_2005
ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.927
CSIRO_3102
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.926
CSIRO_3100
Branched-chain amino acid transport ATP-binding protein.
 
 
  0.874
CSIRO_1426
ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.819
CSIRO_1427
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.800
CSIRO_3099
ABC transporter related protein.
 
 
  0.771
CSIRO_1872
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.714
CSIRO_3106
Phenylacetic acid degradation protein.
 
     0.706
paaF
Phenylacetate-coenzyme A ligasePaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
    0.703
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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