STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaFPhenylacetate-coenzyme A ligasePaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (445 aa)    
Predicted Functional Partners:
CSIRO_3106
Phenylacetic acid degradation protein.
 
 
 0.978
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
 
 
 0.932
paaG
phenylacetate-CoA oxygenase, PaaG subunit.
 
 
 0.857
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit.
 
  
 0.852
paaH
phenylacetate-CoA oxygenase, PaaH subunit.
 
 
 0.835
CSIRO_3108
Transcriptional regulator, TetR family.
 
     0.834
paaI
phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.831
CSIRO_3105
enoyl-CoA hydratase.
 
  
 0.798
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
  
 0.731
CSIRO_3230
Lipopolysaccharide biosynthesis.
    
  0.718
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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