Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_3108Transcriptional regulator, TetR family. (217 aa)    
Predicted Functional Partners:
CSIRO_3106
Phenylacetic acid degradation protein.
 
     0.902
paaF
Phenylacetate-coenzyme A ligasePaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
     0.865
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
 
  
 0.838
CSIRO_3105
enoyl-CoA hydratase.
 
     0.833
CSIRO_3104
Branched-chain amino acid ABC transporter, amino acid-binding protein.
 
     0.721
CSIRO_3110
Hypothetical protein.
       0.656
CSIRO_3111
Putative cytochrome P450 hydroxylase.
       0.613
CSIRO_3112
Hypothetical protein.
       0.565
CSIRO_3101
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.534
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
  
  0.511
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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