Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
paaHphenylacetate-CoA oxygenase, PaaH subunit. (95 aa)    
Predicted Functional Partners:
paaI
phenylacetate-CoA oxygenase, PaaI subunit.
 
 0.999
paaG
phenylacetate-CoA oxygenase, PaaG subunit.
 
 0.999
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.995
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 
 0.979
CSIRO_3106
Phenylacetic acid degradation protein.
 
 
 0.968
CSIRO_3105
enoyl-CoA hydratase.
 
 
 0.909
paaF
Phenylacetate-coenzyme A ligasePaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.902
CSIRO_1248
Benzoyl-CoA oxygenase.
  
 0.899
paaX
Phenylacetic acid degradation operon negative regulatory protein PaaX.
 
   
 0.877
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
 
  
 0.868
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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