Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_3152Iron binding protein SufA for iron-sulfur cluster assembly; Belongs to the HesB/IscA family. (113 aa)    
Predicted Functional Partners:
CSIRO_3158
Cysteine desulfurase.
 
 
 0.987
CSIRO_3576
Putative iron-sulfur cluster assembly scaffold protein.
  
 
 0.978
CSIRO_3810
Ferredoxin.
 
 0.967
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.918
nifU
NifU protein.
 
 0.916
CSIRO_1789
Folate-dependent oxidative stress repair protein; Belongs to the GcvT family.
 
 
 0.916
sufD
Iron-sulfur cluster assembly protein SufD.
  
 0.890
sufB
Iron-sulfur cluster assembly protein SufB.
  
 0.890
sufC
Iron-sulfur cluster assembly ATPase protein SufC.
  
 
 0.876
CSIRO_3683
Monothiol glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.860
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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