STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3171N-acetylmuramoyl-L-alanine amidase. (428 aa)    
Predicted Functional Partners:
CSIRO_3586
Integral membrane protein.
  
   0.942
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.940
CSIRO_2830
Sporulation domain protein.
 
 0.820
CSIRO_3130
Hypothetical protein.
 
  
 0.754
CSIRO_1459
NLP/P60 family lipoprotein.
 
 
 0.703
CSIRO_3170
Multimodular transpeptidase-transglycosylase; Bifunctional.
 
   
 0.701
CSIRO_4082
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.663
CSIRO_2833
Beta N-acetyl-glucosaminidase.
    
 0.653
CSIRO_0797
Peptidase M23B precursor.
 
  
 0.636
CSIRO_0381
Hypothetical protein.
     
 0.613
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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