Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3184Hypothetical protein. (319 aa)    
Predicted Functional Partners:
CSIRO_3185
NADH:ubiquinone oxidoreductase.
 
   
 0.781
CSIRO_3583
Hypothetical protein.
  
     0.659
omlA
Outer membrane lipoprotein OmlA.
  
     0.645
CSIRO_0647
DnaJ-like domain-containing protein.
  
     0.607
CSIRO_3596
Hypothetical protein.
  
   
 0.594
CSIRO_3812
Hypothetical protein.
  
     0.579
CSIRO_2902
Hypothetical protein.
  
     0.575
atpF-2
ATP synthase B' chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.559
CSIRO_4260
Hypothetical protein.
  
     0.557
CSIRO_1032
Hypothetical protein.
  
     0.550
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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