STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3225Putative high-affinity iron permease. (272 aa)    
Predicted Functional Partners:
CSIRO_0346
Ferric iron ABC transporter iron-binding protein.
   
  
 0.851
tyrA
TyrA protein.
  
  
 0.846
CSIRO_3740
Aerobic fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.753
CSIRO_1232
TonB-dependent siderophore receptor.
   
  
 0.696
CSIRO_0580
Hypothetical protein.
   
    0.679
CSIRO_0574
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component.
   
  
 0.573
CSIRO_0597
ABC transporter-like protein.
   
  
 0.573
hmuV
ABC-type hemin transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
   
  
 0.573
ctaA
Heme A synthase, cytochrome oxidase biogenesis protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
       0.511
CSIRO_2196
AttE component of AttEFGH ABC transport system.
  
  
 0.489
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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