STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3230Lipopolysaccharide biosynthesis. (736 aa)    
Predicted Functional Partners:
CSIRO_3231
Capsule polysaccharide export protein.
 
 0.999
CSIRO_1175
Capsule polysaccharide export protein.
 
 0.998
CSIRO_0784
Hypothetical protein.
 
 0.996
CSIRO_3233
Putative glycosyl transferase.
 
 
 0.996
CSIRO_3856
UDP-N-acetylglucosamine 4,6-dehydratase.
  
 
 0.942
CSIRO_3871
UDP-N-acetylglucosamine 4,6-dehydratase.
  
 
 0.942
CSIRO_1654
Outer membrane protein/protective antigen.
 
  
 0.936
CSIRO_3234
Hypothetical protein.
 
  
 0.901
CSIRO_3232
Glycosyltransferase.
 
 
 0.887
CSIRO_3835
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.856
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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