STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3240Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein. (247 aa)    
Predicted Functional Partners:
CSIRO_3239
acyl-CoA dehydrogenase, long-chain specific.
       0.757
CSIRO_3238
acyl-CoA dehydrogenase family protein.
       0.703
CSIRO_2425
Biotin carboxylase.
   
 
  0.668
CSIRO_3241
long-chain-fatty-acid--CoA ligase.
  
 
  0.661
CSIRO_3245
Glutathione-dependent 2-hydroxychromene-2-carboxylate isomerase family protein.
 
     0.647
CSIRO_2214
Putative oxidoreductase.
  
  
  0.540
CSIRO_0626
Putative oxidoreductase.
  
  
  0.534
CSIRO_3242
Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein.
 
  
 
0.529
CSIRO_1156
Putative reductase.
  
  
  0.524
CSIRO_3243
Glutathione S-transferase.
 
     0.457
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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