Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_3242Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein. (241 aa)    
Predicted Functional Partners:
CSIRO_3243
Glutathione S-transferase.
 
     0.830
CSIRO_1156
Putative reductase.
  
 
  0.784
CSIRO_0626
Putative oxidoreductase.
  
 
  0.781
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
  0.747
CSIRO_4223
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
  0.695
gcvP
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.667
CSIRO_1989
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
  0.666
CSIRO_1945
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
  0.665
CSIRO_0040
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
  0.662
CSIRO_2039
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
  0.655
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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