Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_3253Putative O-antigen export system ATP-binding protein. (257 aa)    
Predicted Functional Partners:
rfbD
O-antigen export system permease protein RfbD.
 
 0.999
CSIRO_1175
Capsule polysaccharide export protein.
  
 
 0.887
CSIRO_3231
Capsule polysaccharide export protein.
  
 
 0.887
CSIRO_0784
Hypothetical protein.
  
 
 0.841
CSIRO_3255
Glycosyl transferase, group 1.
 
 
 0.828
CSIRO_3256
GDP-mannose 4,6 dehydratase.
  
  
 0.761
CSIRO_0662
Competence protein F-like protein.
   
    0.739
CSIRO_3634
Dolichol-phosphate mannosyltransferase-like protein.
 
  
 0.678
CSIRO_3262
Hypothetical protein.
  
 
 0.671
CSIRO_3264
Glycosyl transferase, family 2.
 
  
 0.668
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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